Genome sc|0001548


Database

NCBI Assembly

Accession

GCA_016721315.1

Genomics

Accession
NCBI Assembly:GCA_016721315.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.0%
  • Contamination: 1.82%
  • Quality: 80.9
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
19.0 ×
Source
Other features
  • G+C Content: 50.26%
  • Coding Density: 90.5%
  • Codon Table: 11
  • N50: 368,542 bp
  • Contigs: 21
  • Largest Contig: 891,559 bp
  • Assembly Length: 4,491,201 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-09-07
Location
Lat Lon: 56.565132 N 9.042158 E
Toponym
Geo Loc Name: Denmark: Skive
Environment
Sample Type: metagenomic assembly
Isolation Source: activated sludge from Skiv_18-Q3-R9-52 • activated sludge from wastewater treatment plant
Env Broad Scale: aquatic biome [ENVO:00002030]
Env Local Scale: Waste Water [ENVO:00002001]
Env Medium: Activated Sludge [ENVO:00002046]
Other
Depth: 1m
Package
Ncbi Submission Package: MIMAG.wastewater.5.0MIMS.me.wastewater.6.0
Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Illumina sequencing of activated sludge metagenome
Nanopore sequencing of activated sludge metagenome


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