Genome sc|0001551

Name

Villigracilis affinis

Database

NCBI Assembly

Accession

GCA_016718275.1

Genomics

Accession

NCBI Assembly:GCA_016718275.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 91.82%
Contamination: 0.91%
Quality: 87.27

Ribosomal and transfer RNA genes

1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids

Sequencing depth

44.0 ×

Source

Other features

G+C Content: 51.39%
Coding Density: 90.27%
Codon Table: 11
N50: 274,996 bp
Contigs: 28
Largest Contig: 675,312 bp
Assembly Length: 5,057,985 bp
Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Last modified 4 months ago

Sample Metadata

BioSample entries

Date

Collection Date: 2018-08-29

Location

Lat Lon: 55° 25′ 18″ N, 10° 21′ 58″ E

View map of sampling locations

Toponym

Geo Loc Name: Denmark: Odense NW

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from OdNW_18-Q3-R42-56 • activated sludge

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Depth: 1m

Package

Ncbi Submission Package: MIMAG.wastewater.6.0 • MIMS.me.wastewater.5.0

Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater

All retrieved samples

Metadata retrieved 4 months ago

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