Genome sc|0001557


Database

NCBI Assembly

Accession

GCA_016713825.1

Genomics

Accession
NCBI Assembly:GCA_016713825.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.46%
  • Contamination: 3.64%
  • Quality: 76.26
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
33.0 ×
Source
Other features
  • G+C Content: 56.03%
  • Coding Density: 87.07%
  • Codon Table: 11
  • N50: 511,998 bp
  • Contigs: 12
  • Largest Contig: 955,917 bp
  • Assembly Length: 5,432,132 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 8 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-08-29
Location
Lat Lon: 55.552368 N 9.720404 E
Toponym
Geo Loc Name: Denmark: Fredericia
Environment
Sample Type: metagenomic assembly
Isolation Source: activated sludge from Fred_18-Q3-R57-64 • activated sludge from wastewater treatment plant
Env Broad Scale: aquatic biome [ENVO:00002030]
Env Local Scale: Waste Water [ENVO:00002001]
Env Medium: Activated Sludge [ENVO:00002046]
Other
Depth: 1m
Package
Ncbi Submission Package: MIMAG.wastewater.5.0MIMS.me.wastewater.6.0
Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater
All retrieved samples

Metadata retrieved 8 days ago

Sequencing Experiments

Illumina sequencing of activated sludge metagenome
Nanopore sequencing of activated sludge metagenome


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