BioSample Accession(s)

SAMN40154454, SRS20913379

strain

FI-SP1

collection_date

2023-09-11

INSDC secondary accession

SRS20913379

NCBI submission package

Microbe.1.0

organism

Spirobacillus cienkowskii

host

Daphnia magna

geo_loc_name

Finland: Spicarna Tvarminne Achipelago

sample_type

metagenomic assembly

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2024-02-27

ENA-LAST-UPDATE

2024-04-02

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX24128005" alias="FI-SP1_ONT_BaseCalled" center_name="SUB14353529" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX24128005</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14353529">FI-SP1_ONT_BaseCalled</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Basecalled ONT Sequences of Spirobacillus cienkowskii: FI-SP1</TITLE>
  <STUDY_REF accession="SRP499270">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP499270</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1081344</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>The library was prepared using the SQK-LSK114 ligation kit and sequenced on a MinION device with a Spot-ON Flow Cell (R10.4.1).</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS20913379">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS20913379</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN40154454</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>FI-SP1_ONT_BaseCalled</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS20913379</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1837885</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX24128005&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX24128005&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>