SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0001584
JSON
Genome sc|0001584
Name
Paraluminiphilus aquimaris
Ts
Database
INSDC Nucleotide
Accession
CP036501.1
Genomics
Accession
INSDC Nucleotide:
CP036501.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
95.93%
Contamination:
0.44%
Quality:
93.73
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 21 amino acids
Sequencing depth
416.5 ×
Source
BioSample: SAMN10929372
Other features
G+C Content:
52.7%
Coding Density:
91.96%
Codon Table:
11
N50:
2,724,458 bp
Contigs:
1
Largest Contig:
2,724,458 bp
Assembly Length:
2,724,458 bp
Ambiguous Assembly Fraction:
0.0037%
Submitter comments
The Prokaryotic Genome Annotation Pipeline (PGAP) was used to identify tRNA and rRNA genes. Completion and contamination were estimated by CheckM.
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2017-02-23
Location
Lat Lon:
38.23 N 128.67 E
Toponym
Geo Loc Name:
South Korea
Environment
Env Broad Scale:
mairne coastal biomes
Env Local Scale:
surface layer
Env Medium:
seawater
Other
Depth:
10 m
Package
Ncbi Submission Package:
MIGS.ba.water.6.0
Biosamplemodel:
MIGS.ba
All retrieved samples
SAMN10929372
: MIGS Cultured Bacterial/Archaeal sample from Candidatus Paraluminiphilus aquimaris
Metadata retrieved
7 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN10929372
×
Keywords: GSC:MIxS;MIGS:6.0
strain
JH123
collection_date
2017-02-23
isol_growth_condt
cultivation in low-nutrient heterotrophic medium (LNHM) at 18 degC
ref_biomaterial
not applicable
type-material
reference material of Candidatus Paraluminiphilus aquimaris
organism
Candidatus Paraluminiphilus aquimaris
env_broad_scale
mairne coastal biomes
env_local_scale
surface layer
NCBI submission package
MIGS.ba.water.6.0
depth
10 m
num_replicons
1
geo_loc_name
South Korea
env_medium
seawater
lat_lon
38.23 N 128.67 E
BioSampleModel
MIGS.ba
ENA-FIRST-PUBLIC
2022-11-19
ENA-LAST-UPDATE
2023-04-13
Search
×
Names
Publications
Authors
Subjects