Genome sc|0001584

Genomics

Accession

INSDC Nucleotide:CP036501.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 95.93%
• Contamination: 0.44%
• Quality: 93.73

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 21 amino acids

Sequencing depth

416.5 ×

Source

• BioSample: SAMN10929372

Other features

• G+C Content: 52.7%
• Coding Density: 91.96%
• Codon Table: 11
• N50: 2,724,458 bp
• Contigs: 1
• Largest Contig: 2,724,458 bp
• Assembly Length: 2,724,458 bp
• Ambiguous Assembly Fraction: 0.0037%

Submitter comments

The Prokaryotic Genome Annotation Pipeline (PGAP) was used to identify tRNA and rRNA genes. Completion and contamination were estimated by CheckM.

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN10929372

Date

Collection Date: 2017-02-23

Location

Lat Lon: 38.23 N 128.67 E

Toponym

Geo Loc Name: South Korea

Environment

Env Broad Scale: mairne coastal biomes

Env Local Scale: surface layer

Env Medium: seawater

Other

Depth: 10 m

Package

Ncbi Submission Package: MIGS.ba.water.6.0

Biosamplemodel: MIGS.ba

All retrieved samples

• SAMN10929372: MIGS Cultured Bacterial/Archaeal sample from Candidatus Paraluminiphilus aquimaris

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Metadata retrieved about 1 month ago