SeqCode Registry
cognitis nomina
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Genomes
sc|0001604
JSON
Genome sc|0001604
Database
NCBI Assembly
Accession
ASM3746574v1
Genomics
Accession
NCBI Assembly:
ASM3746574v1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
97.65%
Contamination:
0.0%
Quality:
97.65
Source
BioSample: SAMN37643305
Automated checks
Failed: Cannot find ncbi:assembly:ASM3746574v1
Sample Metadata
BioSample entries
BioSample: SAMN37643305
Date
Collection Date:
2019-06-05
Location
Lat Lon:
40.4637 N 3.7492 W
Toponym
Geo Loc Name:
Spain
Environment
Sample Type:
metagenomic assembly
Isolation Source:
feces
Other
Host:
Homo sapiens
Package
Ncbi Submission Package:
MIMAG.6.0
Biosamplemodel:
MIMAG
Additional Accessions
SRR5558136
Append as BioSamples
All retrieved samples
SAMN37643305
: MIMAG Metagenome-assembled Genome sample from Ruminococcus sp.
Metadata retrieved
8 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN37643305
×
Human metagenome from faeces
collection_date
2019-06-05
organism
Ruminococcus sp.
env_broad_scale
missing
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR5558136
environmental-sample
1
env_local_scale
missing
metagenome-source
human gut metagenome
isolate
MAG-GUT74815
NCBI submission package
MIMAG.6.0
host
Homo sapiens
geo_loc_name
Spain
env_medium
missing
lat_lon
40.4637 N 3.7492 W
isolation_source
feces
sample-type
metagenomic assembly
sample corresponding ENA BioSample
SAMEA5501860
BioSampleModel
MIMAG
ENA-FIRST-PUBLIC
2023-10-02
ENA-LAST-UPDATE
2023-10-04
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