Genome sc|0001610

Genomics

Accession

NCBI Assembly:GCA_031458775.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.59%
• Contamination: 2.04%
• Quality: 82.39

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 37.0%)
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

100.0 ×

Source

• BioSample: SAMN35168778
• BioSample: SAMN35165539

Other features

• G+C Content: 68.83%
• Coding Density: 93.56%
• Codon Table: 11
• N50: 52,927 bp
• Contigs: 137
• Largest Contig: 196,893 bp
• Assembly Length: 3,710,879 bp
• Ambiguous Assembly Fraction: 0.0038%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2017-09

Location

Lat Lon: 25.44 N 98.46 E

Toponym

Geo Loc Name: China: Tengchong county, Yunnan, JZ-4 • China: Tengchong, Yunnan

Environment

Sample Type: metagenomic assembly

Isolation Source: Hot spring sediment • JZ-4

Env Broad Scale: Hot spring

Env Local Scale: Hot spring sediment

Env Medium: Hot spring sediment

Other

Depth: Surface

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.sediment • Metagenome or environmental

All retrieved samples

• SAMN35168778: MIMAG Metagenome-assembled Genome sample from Armatimonadota bacterium
• SAMN35165539: Metagenome or environmental sample from hot springs metagenome

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Metadata retrieved 6 months ago