Genome sc|0001622

Genomics

Accession

INSDC Nucleotide:JAVHTH000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.6%
• Contamination: 1.9%
• Quality: 87.1

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

187.0 ×

Source

• SRA: SRX22851833

Other features

• G+C Content: 50.5%
• Coding Density: 90.39%
• Codon Table: 11
• N50: 106,189 bp
• Contigs: 67
• Largest Contig: 328,071 bp
• Assembly Length: 3,518,073 bp
• Ambiguous Assembly Fraction: 0.054%

Submitter comments

Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.

Automated checks

Complete

Sample Metadata

BioSample entries

• BioSample: SRS19828648

Date

Collection Date: 2017-05

Location

Lat Lon: 24.95 N 98.44 E

Toponym

Geo Loc Name: China: Tengchong, Yunnan

Environment

Isolation Source: QQ

Other

Not detected

Package

Ncbi Submission Package: Metagenome.environmental.1.0

Biosamplemodel: Metagenome or environmental

All retrieved samples

• SRS19828648: Metagenome or environmental sample from hot springs metagenome

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Metadata retrieved 5 months ago