Genome sc|0001624


Database

NCBI Assembly

Accession

GCA_030520105.1

Genomics

Accession
NCBI Assembly:GCA_030520105.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 93.19%
  • Contamination: 2.93%
  • Quality: 78.54
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
590.0 ×
Source
Other features
  • G+C Content: 52.0%
  • Coding Density: 91.45%
  • Codon Table: 11
  • N50: 3,952,382 bp
  • Contigs: 2
  • Largest Contig: 3,952,382 bp
  • Assembly Length: 3,988,786 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome was assembled to replicon level with Nanopore long-read and Illumina short-read sequencing, using  SPAdes v3.15.4 to construct a hybrid assembly. Genome quality estimates were done with both CheckM (92.59 % completeness, 0.65 % contamination) and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete

Sample Metadata

BioSample entries
Date
Collection Date: 2016-07-02
Location
Lat Lon: 40.661472 N 119.366139 W
Toponym
Geo Loc Name: USA: Great Boiling Spring, Gerlach, NV
Environment
Isolation Source: hot spring sediment
Env Broad Scale: hot spring [ENVO:00000051]|
Env Local Scale: sediment [ENVO:00002007]
Env Medium: sediment [ENVO:00002007]
Other
Depth: 0
Temp: 85 C
Rel To Oxygen: microaerophilic
Package
Ncbi Submission Package: MIGS.ba.sediment.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.sediment
All retrieved samples

Metadata retrieved 6 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license