Genome sc|0001674

Genomics

Accession

NCBI Assembly:GCA_037179585.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.1%
• Contamination: 0.0%
• Quality: 99.1

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

117.0 ×

Source

• BioSample: SAMN32187528

Other features

• G+C Content: 62.9%
• Coding Density: 86.18%
• Codon Table: 11
• N50: 188,352 bp
• Contigs: 143
• Largest Contig: 611,319 bp
• Assembly Length: 6,945,436 bp
• Ambiguous Assembly Fraction: 0.0014%

Submitter comments

Quast was used to calculate the Assembly statistics, CheckM was used to check for completeness and contamination. Barrnap was used to check for completeness of rRNA fragments, tRNA elements were scanned using tRNAscan.

Automated checks

Complete

Sample Metadata

BioSample entries

• BioSample: SAMN32187528

Date

Collection Date: 2016

Location

Lat Lon: 30.29866667 S 17.90096667 E

Toponym

Geo Loc Name: South Africa: Kamieskroon

Environment

Isolation Source: rhizosphere soil

Env Broad Scale: Succulent Karoo biome

Env Local Scale: Rhizosphere soil

Env Medium: soil sample 1330

Other

Host: Calobota sericea

Package

Ncbi Package: MIGS.ba.plant-associated.6.0

All retrieved samples

• SAMN32187528: MIGS Cultured Bacterial/Archaeal sample from Mesorhizobium sp. Cs1330R2N1

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Metadata retrieved 7 months ago