JSON

Genome sc|0001677

Name

Not registered

Database

NCBI Assembly

Accession

GCA_000981505.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_000981505.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0% (automated estimate: 100.0%)
  • Contamination: 0.0% (automated estimate: 1.9%)
  • Quality: 100.0 (automated estimate: 90.5)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%) (automated estimate: 1)
  • 1 23S rRNA (up to 100.0%) (automated estimate: 1)
  • tRNAs for 20 amino acids (automated estimate: 20)
Sequencing depth
482.0 ×
Source
Other features
  • G+C Content: 37.0% (automated estimate: 36.97%)
  • Coding Density: 93.95%
  • Codon Table: 11
  • N50: 1,356,428 bp
  • Contigs: 1
  • Largest Contig: 1,356,428 bp
  • Assembly Length: 1,356,428 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
This axenic strain was isolated from Lake Zurich, Switzerland and sequenced on an Illumina MiSeq instrument. The genome is complete, containing 1 circular chromosome, although automatic quality assessment by CheckM indicates 79.4% completeness and 1.29% contamination. This inconsistency might be because of genome streamlining.
Automated checks
Complete
Edit genome data
Last modified 9 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2012-12
Location
Not detected
Toponym
Geo Loc Name: United Kingdom: North of England
Environment
Isolation Source: human
Other
Host: Homo sapiens
Package
Ncbi Package: Pathogen.cl.1.0
All retrieved samples
Metadata retrieved 9 months ago


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