Genome sc|0001677

Genomics

Accession

NCBI Assembly:GCA_000981505.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0% (automated estimate: 100.0%)
• Contamination: 0.0% (automated estimate: 1.9%)
• Quality: 100.0 (automated estimate: 90.5)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%) (automated estimate: 1)
• 1 23S rRNA (up to 100.0%) (automated estimate: 1)
• tRNAs for 20 amino acids (automated estimate: 20)

Sequencing depth

482.0 ×

Source

• BioSample: SAMEA3165955

Other features

• G+C Content: 37.0% (automated estimate: 36.97%)
• Coding Density: 93.95%
• Codon Table: 11
• N50: 1,356,428 bp
• Contigs: 1
• Largest Contig: 1,356,428 bp
• Assembly Length: 1,356,428 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

This axenic strain was isolated from Lake Zurich, Switzerland and sequenced on an Illumina MiSeq instrument. The genome is complete, containing 1 circular chromosome, although automatic quality assessment by CheckM indicates 79.4% completeness and 1.29% contamination. This inconsistency might be because of genome streamlining.

Automated checks

Complete

Sample Metadata

BioSample entries

• BioSample: SAMEA3165955

Date

Collection Date: 2012-12

Location

Not detected

Toponym

Geo Loc Name: United Kingdom: North of England

Environment

Isolation Source: human

Other

Host: Homo sapiens

Package

Ncbi Package: Pathogen.cl.1.0

All retrieved samples

• SAMEA3165955: Salmonella enterica subsp I enterica serovar Adelaide H124960605

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Metadata retrieved 7 months ago