JSON

Genome sc|0001697

Name

Not registered

Database

NCBI Assembly

Accession

JAVYLQ000000000

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:JAVYLQ000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.92%
  • Contamination: 0.0%
  • Quality: 97.92
Ribosomal and transfer RNA genes
  • 1 16S rRNA (unknown length)
  • 1 23S rRNA (unknown length)
  • tRNAs for 33 amino acids
Source
Other features
  • G+C Content: 34.44%
Submitter comments
Genome completeness was assessed by 48 conserved DPANN markers provided in 
He, C. et al. Genome-resolved metagenomics reveals site-specific diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems. Nat Microbiol 6, 354–365 (2021). And contamination was assessed by CheckM.

Automated checks
Failed: Cannot find ncbi:assembly:JAVYLQ000000000
Edit genome data
Last modified 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-08
Location
Lat Lon: 24° 54′ 36″ N, 98° 23′ 24″ E
View map of sampling locations
Toponym
Geo Loc Name: China: Tengchong county, Yunnan, BF3 pool
Environment
Sample Type: metagenomic assembly
Isolation Source: Hot spring sediment
Env Broad Scale: Hot spring
Env Local Scale: Hot spring sediment
Env Medium: Hot spring sediment
Other
Depth: Surface
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN36035279 Append as BioSamples
All retrieved samples
Metadata retrieved 2 months ago


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