Genome sc|0001702

Genomics

Accession

INSDC Nucleotide:JAPDQB000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.64%
• Contamination: 1.1%
• Quality: 91.14

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 46 amino acids

Sequencing depth

540.0 ×

Source

• BioSample: SAMN31516255

Other features

• G+C Content: 53.41%
• Coding Density: 88.11%
• Codon Table: 11
• N50: 105,894 bp
• Contigs: 84
• Largest Contig: 303,651 bp
• Assembly Length: 5,857,296 bp
• Ambiguous Assembly Fraction: 0.0017%

Automated checks

Complete

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Last modified 1 day ago

Sample Metadata

BioSample entries

• BioSample: SAMN31516255

Date

Collection Date: 2020-07

Location

Lat Lon: 25.44111 N 98.46000 E

Toponym

Geo Loc Name: China: Tengchong, Yunnan, JinZe Pool 2

Environment

Sample Type: metagenomic assembly

Isolation Source: hot spring sediment

Env Broad Scale: Hydrothermal system

Env Local Scale: Hot spring

Env Medium: Hot spring sediment

Other

Not detected

Package

Ncbi Submission Package: MIMAG.sediment.6.0

Biosamplemodel: MIMAG.sediment

Additional Accessions

SAMN31516064

All retrieved samples

• SAMN31516255: MIMAG Metagenome-assembled Genome sample from Candidatus Zhuqueibacterota bacterium

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Metadata retrieved 1 day ago