JSON

Genome sc|0001768

Database

INSDC Nucleotide

Accession

CP119310

Genomics

Accession
INSDC Nucleotide:CP119310
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.2%
  • Contamination: 0.9%
  • Quality: 92.7
Ribosomal and transfer RNA genes
  • 6 16S rRNAs (up to 100.0%)
  • 6 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
123.0 ×
Source
Other features
  • G+C Content: 35.08%
  • Coding Density: 88.88%
  • Codon Table: 11
  • N50: 4,227,036 bp
  • Contigs: 1
  • Largest Contig: 4,227,036 bp
  • Assembly Length: 4,227,036 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2018-04-20
Location
Lat Lon: 54.10 N 12.74 E
Toponym
Geo Loc Name: Germany: Trebel valley
Environment
Isolation Source: Trebel valley fen
Env Broad Scale: ENVO:00000232
Env Local Scale: ENVO:00000232
Env Medium: ENVO:00000232
Other
Depth: 0.25 m
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIMAG.soil.5.0
Biosamplemodel: MIMAG.soil
Additional Accessions
SAMN19296169 Append as BioSamples
All retrieved samples
Metadata retrieved 4 months ago


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