JSON

Genome sc|0001768

Name

Not registered

Database

INSDC Nucleotide

Accession

CP119310

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
INSDC Nucleotide:CP119310
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.2%
  • Contamination: 0.9%
  • Quality: 92.7
Ribosomal and transfer RNA genes
  • 6 16S rRNAs (up to 100.0%)
  • 6 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
123.0 ×
Source
Other features
  • G+C Content: 35.08%
  • Coding Density: 88.88%
  • Codon Table: 11
  • N50: 4,227,036 bp
  • Contigs: 1
  • Largest Contig: 4,227,036 bp
  • Assembly Length: 4,227,036 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 8 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-04-20
Location
Lat Lon: 54.10 N 12.74 E
Toponym
Geo Loc Name: Germany: Trebel valley
Environment
Isolation Source: Trebel valley fen
Env Broad Scale: ENVO:00000232
Env Local Scale: ENVO:00000232
Env Medium: ENVO:00000232
Other
Depth: 0.25 m
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIMAG.soil.5.0
Biosamplemodel: MIMAG.soil
Additional Accessions
SAMN19296169 Append as BioSamples
All retrieved samples
Metadata retrieved 8 months ago


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