Genome sc|0001816

Name

Jordiarchaeum madagascariense^Ts

Database

NCBI Assembly

Accession

GCA_019056875.1

Typification

Nomenclatural type of:

Jordiarchaeum madagascariense^Ts

Genomics

Accession

NCBI Assembly:GCA_019056875.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 95.02%
Contamination: 2.41%
Quality: 82.97

Ribosomal and transfer RNA genes

0 16S rRNAs
0 23S rRNAs
tRNAs for 16 amino acids

Sequencing depth

95.0 ×

Source

Other features

G+C Content: 41.0%
Coding Density: 83.73%
Codon Table: 11
N50: 8,269 bp
Contigs: 536
Largest Contig: 34,298 bp
Assembly Length: 3,677,642 bp
Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM was then applied to calculate estimated completeness and contamination

Automated checks

Complete

Last modified almost 2 years ago

Sample Metadata

BioSample entries

Date

Collection Date: 2013

Location

Lat Lon: 18° 3′ S, 47° 1′ 48″ E

View map of sampling locations

Toponym

Geo Loc Name: Madagascar

Environment

Sample Type: metagenomic assembly

Isolation Source: fossilized bones from two species of extinct elephant birds

Env Broad Scale: terrestrial biome

Env Local Scale: fossil

Env Medium: bone

Other

Not detected

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • MIMS.me.miscellaneous.6.0

Biosamplemodel: MIMAG.sediment • MIMS.me.miscellaneous

Additional Accessions

DRR027576, DRR027577, DRR027578, DRR027579, DRR027580, DRR027581, DRR027589, DRR027590, DRR027591, DRR027592 in BioProject PRJDB3255

All retrieved samples

Metadata retrieved almost 2 years ago

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