JSON

Genome sc|0001883

Name

Not registered

Database

NCBI Assembly

Accession

GCA_002782675.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_002782675.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 89.15% (automated estimate: 91.5%)
  • Contamination: 0.0% (automated estimate: 0.9%)
  • Quality: 89.15 (automated estimate: 87.0)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 33.65% (automated estimate: 33.62%)
  • Coding Density: 86.6%
  • Codon Table: 11
  • N50: 12,703 bp
  • Contigs: 173
  • Largest Contig: 63,381 bp
  • Assembly Length: 1,671,248 bp
  • Ambiguous Assembly Fraction: 0.088%
Automated checks
Complete
Edit genome data
Last modified 8 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2014-04-08
Location
Lat Lon: 38.56 N 110.8 W
Toponym
Geo Loc Name: USA: Crystal Geyser near Green River, Utah
Environment
Env Material: groundwater
Sample Type: metagenomic assembly
Env Biome: subsurface
Isolation Source: groundwater
Other
Depth: 2 m
Package
Ncbi Submission Package: MIGS.ba.water.5.0
Biosamplemodel: MIGS.ba
All retrieved samples
Metadata retrieved 8 months ago


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