JSON

Genome sc|0001896

Name

Not registered

Database

NCBI Assembly

Accession

GCA_034506455.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_034506455.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 89.0% (automated estimate: 93.4%)
  • Contamination: 0.0% (automated estimate: 3.8%)
  • Quality: 89.0 (automated estimate: 74.4)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
122.0 ×
Source
Other features
  • G+C Content: 53.47%
  • Coding Density: 92.64%
  • Codon Table: 11
  • N50: 20,382 bp
  • Contigs: 238
  • Largest Contig: 70,585 bp
  • Assembly Length: 3,181,608 bp
  • Ambiguous Assembly Fraction: 0.45%
Automated checks
Complete
Edit genome data
Last modified 8 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2021-01
Location
Not detected
Toponym
Geo Loc Name: China: Tengchong, Yunnan, DPZ site 2
Environment
Sample Type: metagenomic assembly
Isolation Source: hot spring sediment
Env Broad Scale: Hydrothermal system
Env Local Scale: Hot spring
Env Medium: Hot spring sediment
Other
Not detected
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN31516057 Append as BioSamples
All retrieved samples
Metadata retrieved 8 months ago


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