Genome sc|0001922


Name

Not registered

Database

INSDC Nucleotide

Accession

CP097899.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
INSDC Nucleotide:CP097899.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.0% (automated estimate: 100.0%)
  • Contamination: 0.7% (automated estimate: 6.6%)
  • Quality: 94.5 (automated estimate: 67.0)
Ribosomal and transfer RNA genes
  • 8 16S rRNAs (up to 100.0%) (automated estimate: 8)
  • 8 23S rRNAs (up to 100.0%) (automated estimate: 8)
  • tRNAs for 20 amino acids
Sequencing depth
123.0 ×
Source
Other features
  • G+C Content: 37.8% (automated estimate: 37.83%)
  • Coding Density: 85.47%
  • Codon Table: 11
  • N50: 5,268,630 bp
  • Contigs: 1
  • Largest Contig: 5,268,630 bp
  • Assembly Length: 5,268,630 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data

Last modified 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: not available
Location
Lat Lon: 5.931 N 73.304 W
Toponym
Geo Loc Name: Colombia:Gambita
Environment
Isolation Source: decomposition metagenome • soil
Env Broad Scale: ENVO:00002261
Env Local Scale: ENVO:00002261
Env Medium: ENVO:00001998
Other
Host: not available
Package
Ncbi Submission Package: MIMAG.5.0Metagenome.environmental.1.0
Biosamplemodel: MIMAG • Metagenome or environmental
All retrieved samples

Metadata retrieved 2 months ago

Sequencing Experiments

Metagenome Seq of MELMC
Metagenome Seq of MELMC
Metagenome Seq of MELMC


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