SeqCode Registry
cognitis nomina
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Genomes
sc|0001938
JSON
Genome sc|0001938
Database
INSDC Nucleotide
Accession
JBDRUX000000000
Genomics
Accession
INSDC Nucleotide:
JBDRUX000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
90.81%
(automated estimate: 90.6%)
Contamination:
1.12%
(automated estimate: 0.9%)
Quality:
85.21
(automated estimate: 86.1)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
2 23S rRNAs (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
8.643 ×
Source
BioSample: SAMN40924738
Other features
G+C Content:
40.76%
(automated estimate: 40.76%)
Coding Density:
87.73%
Codon Table:
11
N50:
22,056 bp
Contigs:
135
Largest Contig:
126,576 bp
Assembly Length:
2,309,537 bp
Ambiguous Assembly Fraction:
0.0022%
Automated checks
Complete
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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