SeqCode Registry
cognitis nomina
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Genomes
sc|0001945
JSON
Genome sc|0001945
Database
INSDC Nucleotide
Accession
JBDRUN000000000
Genomics
Accession
INSDC Nucleotide:
JBDRUN000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
91.21%
(automated estimate: 89.6%)
Contamination:
0.0%
(automated estimate: 0.0%)
Quality:
91.21
(automated estimate: 89.6)
Ribosomal and transfer RNA genes
2 16S rRNAs (up to 76.0%)
1 23S rRNA (up to 79.0%)
tRNAs for 21 amino acids
Sequencing depth
9.393 ×
Source
BioSample: SAMN40924748
Other features
G+C Content:
58.37%
(automated estimate: 58.37%)
Coding Density:
90.05%
Codon Table:
11
N50:
24,678 bp
Contigs:
124
Largest Contig:
137,183 bp
Assembly Length:
2,506,632 bp
Ambiguous Assembly Fraction:
0.0024%
Automated checks
Complete
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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