SeqCode Registry
cognitis nomina
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Genomes
sc|0000221
JSON
Genome sc|0000221
Name
“Fournierella merdigallinarum”
Database
NCBI Assembly
Accession
GCA_019117205.1
Genomics
Accession
NCBI Assembly:
GCA_019117205.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
97.28%
Contamination:
4.08%
Quality:
76.88
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 18 amino acids
Source
BioSample: SAMN15816675
BioSample: SAMN08010166
Other features
G+C Content:
64.93%
Coding Density:
89.71%
Codon Table:
11
N50:
35,275 bp
Contigs:
119
Largest Contig:
116,533 bp
Assembly Length:
2,500,711 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2015-09-16
Location
Not detected
Toponym
Geo Loc Name:
China:Hunan
Environment
Sample Type:
metagenomic assembly
Isolation Source:
colorectum
Other
Host:
Gallus gallus
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental • Metagenome or environmental
Additional Accessions
SRR6323130
All retrieved samples
SAMN15816675
: Microbe sample from Candidatus Fournierella merdigallinarum
SAMN08010166
: Metagenome or environmental sample from chicken gut metagenome
Metadata retrieved
10 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15816675
×
organism
Candidatus Fournierella merdigallinarum
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR6323130
environmental sample
1
Source Metagenome Bioproject
PRJNA417359
metagenome source
gut metagenome
isolate
6296
NCBI submission package
Microbe.1.0
GTDB_organism_name
Fournierella merdigallinarum
host
Gallus gallus
previous_organism_name
Fournierella sp.
NCBI_LCA_organism_name
Fournierella sp.
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-09-21
ENA-LAST-UPDATE
2021-06-09
SAMN08010166
×
feed_addictive_/growth_promoter
50 mg/kg Sangrovit® (Macleaya cordata extract 3.75% w/w premix)
sample replicate
digesta from one chicken (biological replicate 2)
INSDC secondary accession
SRS2714740
organism
chicken gut metagenome
collection date
2015-09-16
isolation source
colorectum
geo loc name
China:Hunan
host
Gallus gallus
host age
56-day
host gender
female
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2017-12-03
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