JSON

Genome sc|0002241

Name

Not registered

Database

NCBI Assembly

Accession

GCA_040095915.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_040095915.1
Cultures
Strain sc|0040615
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.77% (automated estimate: 97.2%)
  • Contamination: 0.45% (automated estimate: 0.9%)
  • Quality: 97.52 (automated estimate: 92.7)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%) (automated estimate: 1)
  • 1 23S rRNA (up to 100.0%) (automated estimate: 1)
  • tRNAs for 20 amino acids (automated estimate: 20)
Sequencing depth
957.0 ×
Source
Other features
  • G+C Content: 55.98% (automated estimate: 55.98%)
  • Coding Density: 87.36%
  • Codon Table: 11
  • N50: 190,904 bp
  • Contigs: 20
  • Largest Contig: 326,431 bp
  • Assembly Length: 2,030,922 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 3 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2020-02-18
Location
Lat Lon: 50° 46′ 35″ N, 6° 2′ 37″ E
View map of sampling locations
Toponym
Geo Loc Name: Germany:Aachen
Environment
Env Broad Scale: urban biome [ENVO:01000249]
Env Local Scale: digestive tract environment [ENVO:01001033]
Env Medium: fecal material [ENVO:00002003]
Other
Host: Homo sapiens
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIGS.ba.human-gut.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
Metadata retrieved about 1 year ago


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