JSON

Genome sc|0002241

Name

“Bifidobacterium hominis”

Database

NCBI Assembly

Accession

GCA_040095915.1

Genomics

Accession
NCBI Assembly:GCA_040095915.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.77%
  • Contamination: 0.45%
  • Quality: 97.52
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
957.0 ×
Source
Other features
  • G+C Content: 55.98%
  • Coding Density: 87.36%
  • Codon Table: 11
  • N50: 190,904 bp
  • Contigs: 20
  • Largest Contig: 326,431 bp
  • Assembly Length: 2,030,922 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2020-02-18
Location
Lat Lon: 50.776389 N 6.043611 E
Toponym
Geo Loc Name: Germany:Aachen
Environment
Env Broad Scale: urban biome [ENVO:01000249]
Env Local Scale: digestive tract environment [ENVO:01001033]
Env Medium: fecal material [ENVO:00002003]
Other
Host: Homo sapiens
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIGS.ba.human-gut.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
Metadata retrieved 4 months ago


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