JSON

Genome sc|0002249

Name

“Faecalibacterium intestinale”

Database

NCBI Assembly

Accession

GCA_040096575.1

Genomics

Accession
NCBI Assembly:GCA_040096575.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 3 23S rRNAs (up to 45.0%)
  • tRNAs for 19 amino acids
Sequencing depth
431.0 ×
Source
Other features
  • G+C Content: 56.43%
  • Coding Density: 86.04%
  • Codon Table: 11
  • N50: 92,486 bp
  • Contigs: 78
  • Largest Contig: 380,592 bp
  • Assembly Length: 2,973,806 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Ribosomal RNA genes were detected using metaxa2.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2020-07-20
Location
Lat Lon: 50.776389 N 6.043611 E
Toponym
Geo Loc Name: Germany:Aachen
Environment
Env Broad Scale: urban biome [ENVO:01000249]
Env Local Scale: digestive tract environment [ENVO:01001033]
Env Medium: fecal material [ENVO:00002003]
Other
Host: Homo sapiens
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIGS.ba.human-gut.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
Metadata retrieved 4 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license