JSON

Genome sc|0002260

Name

“Ruminococcoides intestinale”

Database

NCBI Assembly

Accession

GCA_040096305.1

Genomics

Accession
NCBI Assembly:GCA_040096305.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.33%
  • Contamination: 1.01%
  • Quality: 94.28
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 66.0%)
  • tRNAs for 18 amino acids
Sequencing depth
80.0 ×
Source
Other features
  • G+C Content: 40.88%
  • Coding Density: 87.27%
  • Codon Table: 11
  • N50: 69,317 bp
  • Contigs: 59
  • Largest Contig: 148,621 bp
  • Assembly Length: 2,317,003 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Ribosomal RNA genes were detected using metaxa2.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2020-05-08
Location
Lat Lon: 50.776389 N 6.043611 E
Toponym
Geo Loc Name: Germany:Aachen
Environment
Env Broad Scale: urban biome [ENVO:01000249]
Env Local Scale: digestive tract environment [ENVO:01001033]
Env Medium: fecal material [ENVO:00002003]
Other
Host: Homo sapiens
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIGS.ba.human-gut.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
Metadata retrieved 4 months ago


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