JSON

Genome sc|0002261

Name

“Ruthenibacterium intestinale”

Database

NCBI Assembly

Accession

GCA_040096265.1

Genomics

Accession
NCBI Assembly:GCA_040096265.1
Cultures
Strain sc|0038765
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.3%
  • Contamination: 0.0%
  • Quality: 98.3
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
249.0 ×
Source
Other features
  • G+C Content: 54.69%
  • Coding Density: 90.25%
  • Codon Table: 11
  • N50: 53,148 bp
  • Contigs: 117
  • Largest Contig: 175,477 bp
  • Assembly Length: 3,095,593 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 4 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2020-05-08
Location
Lat Lon: 50.776389 N 6.043611 E
Toponym
Geo Loc Name: Germany:Aachen
Environment
Env Broad Scale: urban biome [ENVO:01000249]
Env Local Scale: digestive tract environment [ENVO:01001033]
Env Medium: fecal material [ENVO:00002003]
Other
Host: Homo sapiens
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIGS.ba.human-gut.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
Metadata retrieved 4 days ago


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