Genome sc|0002263

Genomics

Accession

NCBI Assembly:GCA_040096245.1

Cultures

Strain sc|0038767

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.52%
• Contamination: 2.13%
• Quality: 88.87

Ribosomal and transfer RNA genes

• 3 16S rRNAs (up to 45.0%)
• 3 23S rRNAs (up to 42.0%)
• tRNAs for 20 amino acids

Sequencing depth

387.0 ×

Source

• BioSample: SAMN40466808

Other features

• G+C Content: 45.72%
• Coding Density: 88.56%
• Codon Table: 11
• N50: 73,942 bp
• Contigs: 137
• Largest Contig: 202,359 bp
• Assembly Length: 3,875,389 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Ribosomal RNA genes were detected using metaxa2.

Automated checks

Complete

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Last modified 6 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN40466808

Date

Collection Date: 2020-06-04

Location

Lat Lon: 50.776389 N 6.043611 E

Toponym

Geo Loc Name: Germany:Aachen

Environment

Env Broad Scale: urban biome [ENVO:01000249]

Env Local Scale: digestive tract environment [ENVO:01001033]

Env Medium: fecal material [ENVO:00002003]

Other

Host: Homo sapiens

Rel To Oxygen: anaerobe

Package

Ncbi Submission Package: MIGS.ba.human-gut.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut

All retrieved samples

• SAMN40466808: Waltera hominis CLA-AA-H183 draft genome

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Metadata retrieved 6 days ago