JSON

Genome sc|0002267

Name

Not registered

Database

NCBI Assembly

Accession

GCA_016929715.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_016929715.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.14% (automated estimate: 90.6%)
  • Contamination: 3.3% (automated estimate: 0.9%)
  • Quality: 77.64 (automated estimate: 86.1)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 17 amino acids
Sequencing depth
17.0 ×
Source
Other features
  • G+C Content: 42.78%
  • Coding Density: 95.56%
  • Codon Table: 11
  • N50: 23,798 bp
  • Contigs: 142
  • Largest Contig: 60,712 bp
  • Assembly Length: 1,978,835 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 7 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-09
Location
Lat Lon: 34.99562 N 98.68895 W
Toponym
Geo Loc Name: USA: Anadarko, OK, Zodletone Spring
Environment
Sample Type: metagenomic assembly
Isolation Source: freshwater sediment
Env Broad Scale: Freshwater sediment biome
Env Local Scale: sediment
Env Medium: sediment
Other
Depth: 1m
Package
Ncbi Submission Package: MIMAG.sediment.5.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN17269717 Append as BioSamples
All retrieved samples
Metadata retrieved 7 months ago


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