JSON

Genome sc|0002270

Name

Not registered

Database

NCBI Assembly

Accession

GCA_001412365.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_001412365.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.24% (automated estimate: 96.2%)
  • Contamination: 2.2% (automated estimate: 1.9%)
  • Quality: 84.24 (automated estimate: 86.7)
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 63.0%)
  • 2 23S rRNAs (up to 41.0%)
  • tRNAs for 20 amino acids
Sequencing depth
214.0 ×
Source
Other features
  • G+C Content: 37.86%
  • Coding Density: 92.21%
  • Codon Table: 11
  • N50: 12,300 bp
  • Contigs: 433
  • Largest Contig: 68,577 bp
  • Assembly Length: 3,139,690 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 7 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2013-11-10
Location
Lat Lon: 32.70 N 117.16 W
Toponym
Geo Loc Name: USA: San Diego Bay Sediment
Environment
Sample Type: metagenomic assembly
Isolation Source: methanogenic consortium capable of long-chain paraffin degradation (SDB culture) enriched from contaminated sediments of San Diego Bay, California; degrades n-alkanes from C25 to C50
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 7 months ago


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license