Genome sc|0002271

Name

Not registered

Database

NCBI Assembly

Accession

GCA_002771845.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession

NCBI Assembly:GCA_002771845.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 95.6% (automated estimate: 90.6%)
Contamination: 2.2% (automated estimate: 1.9%)
Quality: 84.6 (automated estimate: 81.1)

Ribosomal and transfer RNA genes

2 16S rRNAs (up to 100.0%)
1 23S rRNA (up to 77.0%)
tRNAs for 19 amino acids

Sequencing depth

10.0 ×

Source

BioSample: GCA_002771845.1

Other features

G+C Content: 39.56%
Coding Density: 84.86%
Codon Table: 11
N50: 8,347 bp
Contigs: 388
Largest Contig: 41,447 bp
Assembly Length: 2,041,727 bp
Ambiguous Assembly Fraction: 1.17%

Automated checks

Complete

Edit genome data

Last modified 7 months ago

Sample Metadata

BioSample entries

BioSample: GCA_002771845.1

Date

Not detected

Location

Not detected

Toponym

Not detected

Environment

Analyte Type: DNA

Other

Not detected

Package

Ncbi Package: Generic.1.0

All retrieved samples

GCA_002771845.1: Non-tumor DNA sample from Saliva of a human female participant in the dbGaP study "A Family-Based Study of Genes and Environment in Young-Onset Breast Cancer"

Metadata retrieved 7 months ago

© 2022-2025 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license