JSON

Genome sc|0002271

Database

NCBI Assembly

Accession

GCA_002771845.1

Genomics

Accession
NCBI Assembly:GCA_002771845.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6% (automated estimate: 90.6%)
  • Contamination: 2.2% (automated estimate: 1.9%)
  • Quality: 84.6 (automated estimate: 81.1)
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 1 23S rRNA (up to 77.0%)
  • tRNAs for 19 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 39.56%
  • Coding Density: 84.86%
  • Codon Table: 11
  • N50: 8,347 bp
  • Contigs: 388
  • Largest Contig: 41,447 bp
  • Assembly Length: 2,041,727 bp
  • Ambiguous Assembly Fraction: 1.17%
Automated checks
Complete

Sample Metadata

Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Analyte Type: DNA
Other
Not detected
Package
Ncbi Package: Generic.1.0
All retrieved samples
Metadata retrieved 4 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license