JSON

Genome sc|0002272

Name

Not registered

Database

NCBI Assembly

Accession

GCA_015490465.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_015490465.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.53% (automated estimate: 83.0%)
  • Contamination: 0.0% (automated estimate: 0.0%)
  • Quality: 91.53 (automated estimate: 83.0)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 57.0%)
  • tRNAs for 20 amino acids
Sequencing depth
13.1 ×
Source
Other features
  • G+C Content: 55.09%
  • Coding Density: 93.54%
  • Codon Table: 11
  • N50: 22,179 bp
  • Contigs: 126
  • Largest Contig: 60,702 bp
  • Assembly Length: 2,053,153 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 7 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-03
Location
Lat Lon: 34.86111866 S 179.0576651 E
Toponym
Geo Loc Name: Pacific Ocean
Environment
Sample Type: metagenomic assembly
Isolation Source: deep-sea hydrothermal deposit
Env Broad Scale: marine hydrothermal vent biome [ENVO:01000030]
Env Local Scale: marine hydrothermal vent [ENVO:01000122]
Env Medium: deep-sea hydrothermal deposit
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
Additional Accessions
SAMN12239309 Append as BioSamples
All retrieved samples
Metadata retrieved 7 months ago


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