JSON

Genome sc|0002273

Name

Not registered

Database

NCBI Assembly

Accession

GCA_013153965.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_013153965.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.52% (automated estimate: 83.0%)
  • Contamination: 0.0% (automated estimate: 1.9%)
  • Quality: 90.52 (automated estimate: 73.5)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
50.0 ×
Source
Other features
  • G+C Content: 58.23%
  • Coding Density: 96.86%
  • Codon Table: 11
  • N50: 36,256 bp
  • Contigs: 63
  • Largest Contig: 113,088 bp
  • Assembly Length: 1,528,338 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 7 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2014-01-01
Location
Lat Lon: 9.7712 N 104.2789 W
Toponym
Geo Loc Name: Pacific Ocean: East Pacific Rise
Environment
Sample Type: metagenomic assembly
Isolation Source: deepsea hydrothermal sulfide chimney
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
Additional Accessions
This BioSample is a metagenomic assembly obtained from the hydrothermal vent metagenome BioSample SAMN13915758 Append as BioSamples
All retrieved samples
Metadata retrieved 7 months ago


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