JSON

Genome sc|0002274

Database

NCBI Assembly

Accession

GCA_002421425.1

Genomics

Accession
NCBI Assembly:GCA_002421425.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.61% (automated estimate: 94.3%)
  • Contamination: 1.69% (automated estimate: 2.8%)
  • Quality: 88.16 (automated estimate: 80.3)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 18 amino acids
Sequencing depth
12.8 ×
Source
Other features
  • G+C Content: 41.76%
  • Coding Density: 95.43%
  • Codon Table: 11
  • N50: 110,925 bp
  • Contigs: 26
  • Largest Contig: 191,282 bp
  • Assembly Length: 1,622,116 bp
  • Ambiguous Assembly Fraction: 0.011%
Automated checks
Complete

Sample Metadata

Date
Collection Date: not applicable
Location
Not detected
Toponym
Geo Loc Name: Canada: Syncrude, Ft. McMurray, Alberta
Environment
Sample Type: metagenomic assembly
Isolation Source: waste water
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 4 months ago


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