JSON

Genome sc|0002275

Name

Not registered

Database

NCBI Assembly

Accession

GCA_017999445.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly: GCA_017999445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.61% (automated estimate: 94.3%)
  • Contamination: 0.0% (automated estimate: 0.9%)
  • Quality: 96.61 (automated estimate: 89.8)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
90.3 ×
Source
Other features
  • G+C Content: 40.18%
  • Coding Density: 94.38%
  • Codon Table: 11
  • N50: 223,449 bp
  • Contigs: 15
  • Largest Contig: 279,408 bp
  • Assembly Length: 1,514,041 bp
  • Ambiguous Assembly Fraction: 0.0066%
Automated checks
Complete
Edit genome data
Last modified 7 months ago

Sample Metadata

BioSample entries
Date
Not detected
Location
Lat Lon: 54.114698 N 13.430010 E
Toponym
Geo Loc Name: Germany: Greifswald
Environment
Sample Type: metagenome assembly
Isolation Source: wastewater
Env Broad Scale: ENVO:00002043
Env Local Scale: ENVO:00002044
Env Medium: ENVO:00003965
Other
Not detected
Package
Ncbi Submission Package: MIMAG.wastewater.6.0
Biosamplemodel: MIMAG.wastewater
Additional Accessions
SAMN14069867, SAMN14069883, SAMN14069900, SAMN14069917, SAMN14069934, SAMN14069951, SAMN14069968 Append as BioSamples
All retrieved samples
Metadata retrieved 7 months ago


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