Genome sc|0002275


Database

NCBI Assembly

Accession

GCA_017999445.1

Genomics

Accession
NCBI Assembly: GCA_017999445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.61% (automated estimate: 94.3%)
  • Contamination: 0.0% (automated estimate: 0.9%)
  • Quality: 96.61 (automated estimate: 89.8)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
90.3 ×
Source
Other features
  • G+C Content: 40.18%
  • Coding Density: 94.38%
  • Codon Table: 11
  • N50: 223,449 bp
  • Contigs: 15
  • Largest Contig: 279,408 bp
  • Assembly Length: 1,514,041 bp
  • Ambiguous Assembly Fraction: 0.0066%
Automated checks
Complete

Sample Metadata

Date
Collection Date: not applicable
Location
Lat Lon: 54.114698 N 13.430010 E
Toponym
Geo Loc Name: Germany: Greifswald
Environment
Sample Type: metagenome assembly
Isolation Source: wastewater
Env Broad Scale: ENVO:00002043
Env Local Scale: ENVO:00002044
Env Medium: ENVO:00003965
Other
Not detected
Package
Ncbi Submission Package: MIMAG.wastewater.6.0
Biosamplemodel: MIMAG.wastewater
Additional Accessions
SAMN14069867, SAMN14069883, SAMN14069900, SAMN14069917, SAMN14069934, SAMN14069951, SAMN14069968 Append as BioSamples
All retrieved samples

Metadata retrieved 4 months ago


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