JSON

Genome sc|0002277

Database

NCBI Assembly

Accession

GCA_015490555.1

Genomics

Accession
NCBI Assembly: GCA_015490555.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.51% (automated estimate: 91.5%)
  • Contamination: 0.1% (automated estimate: 1.9%)
  • Quality: 91.01 (automated estimate: 82.0)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 69.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
11.4 ×
Source
Other features
  • G+C Content: 54.73%
  • Coding Density: 94.87%
  • Codon Table: 11
  • N50: 28,522 bp
  • Contigs: 109
  • Largest Contig: 77,974 bp
  • Assembly Length: 2,163,145 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2018-03
Location
Lat Lon: 34.86111866 S 179.0576651 E
Toponym
Geo Loc Name: Pacific Ocean
Environment
Sample Type: metagenomic assembly
Isolation Source: deep-sea hydrothermal deposit
Env Broad Scale: marine hydrothermal vent biome [ENVO:01000030]
Env Local Scale: marine hydrothermal vent [ENVO:01000122]
Env Medium: deep-sea hydrothermal deposit
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
Additional Accessions
SAMN12239309 Append as BioSamples
All retrieved samples
Metadata retrieved 4 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license