JSON

Genome sc|0002278

Database

NCBI Assembly

Accession

GCA_016930175.1

Genomics

Accession
NCBI Assembly:GCA_016930175.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.04% (automated estimate: 92.5%)
  • Contamination: 0.0% (automated estimate: 1.9%)
  • Quality: 94.04 (automated estimate: 83.0)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 30.0%)
  • tRNAs for 20 amino acids
Sequencing depth
48.9 ×
Source
Other features
  • G+C Content: 38.02%
  • Coding Density: 89.8%
  • Codon Table: 11
  • N50: 103,954 bp
  • Contigs: 48
  • Largest Contig: 241,672 bp
  • Assembly Length: 2,344,829 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2017-09
Location
Lat Lon: 34.99562 N 98.68895 W
Toponym
Geo Loc Name: USA: Anadarko, OK, Zodletone Spring
Environment
Sample Type: metagenomic assembly
Isolation Source: freshwater sediment
Env Broad Scale: Freshwater sediment biome
Env Local Scale: sediment
Env Medium: sediment
Other
Depth: 1m
Package
Ncbi Submission Package: MIMAG.sediment.5.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN17269717 Append as BioSamples
All retrieved samples
Metadata retrieved 4 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license