JSON

Genome sc|0002281

Name

Not registered

Database

NCBI Assembly

Accession

GCA_012517375.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_012517375.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.07% (automated estimate: 99.1%)
  • Contamination: 1.12% (automated estimate: 2.8%)
  • Quality: 90.47 (automated estimate: 85.1)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
393.6 ×
Source
Other features
  • G+C Content: 48.75%
  • Coding Density: 90.06%
  • Codon Table: 11
  • N50: 33,841 bp
  • Contigs: 125
  • Largest Contig: 86,033 bp
  • Assembly Length: 2,539,523 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 7 months ago

Sample Metadata

BioSample entries
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Sample Type: metagenomic assembly
Isolation Source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks
Other
Not detected
Package
Ncbi Submission Package: MIMAG.5.0
Biosamplemodel: MIMAG
Additional Accessions
This BioSample is a metagenomic assembly obtained from the anaerobic digester metagenome reads deposited in ERR1876140, ERR1876141 Append as BioSamples
All retrieved samples
Metadata retrieved 7 months ago


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