Genome sc|0002281

Genomics

Accession

NCBI Assembly:GCA_012517375.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.07% (automated estimate: 99.1%)
• Contamination: 1.12% (automated estimate: 2.8%)
• Quality: 90.47 (automated estimate: 85.1)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

393.6 ×

Source

• BioSample: SAMN13894299

Other features

• G+C Content: 48.75%
• Coding Density: 90.06%
• Codon Table: 11
• N50: 33,841 bp
• Contigs: 125
• Largest Contig: 86,033 bp
• Assembly Length: 2,539,523 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

Date

Collection Date: not applicable

Location

Lat Lon: not applicable

Toponym

Geo Loc Name: not applicable

Environment

Sample Type: metagenomic assembly

Isolation Source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

Env Broad Scale: not applicable

Env Local Scale: not applicable

Env Medium: not applicable

Other

Not detected

Package

Ncbi Submission Package: MIMAG.5.0

Biosamplemodel: MIMAG

Additional Accessions

This BioSample is a metagenomic assembly obtained from the anaerobic digester metagenome reads deposited in ERR1876140, ERR1876141 Append as BioSamples

All retrieved samples

• SAMN13894299: MIMAG0754

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Metadata retrieved 4 months ago