JSON

Genome sc|0002283

Name

Not registered

Database

NCBI Assembly

Accession

GCA_004376785.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_004376785.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.68% (automated estimate: 94.3%)
  • Contamination: 2.25% (automated estimate: 1.9%)
  • Quality: 83.43 (automated estimate: 84.8)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 41.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 17 amino acids
Sequencing depth
40.0 ×
Source
Other features
  • G+C Content: 36.57%
  • Coding Density: 92.0%
  • Codon Table: 11
  • N50: 7,472 bp
  • Contigs: 350
  • Largest Contig: 39,040 bp
  • Assembly Length: 1,920,574 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 7 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2011-01-26
Location
Lat Lon: 27.43 N 86.01 W
Toponym
Geo Loc Name: Atlantic Ocean
Environment
Sample Type: metagenomic assembly
Isolation Source: deep sea sediments associated with petroleum seepage
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 7 months ago


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