JSON

Genome sc|0002285

Database

NCBI Assembly

Accession

GCA_016936155.1

Genomics

Accession
NCBI Assembly:GCA_016936155.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.0% (automated estimate: 81.1%)
  • Contamination: 2.25% (automated estimate: 2.8%)
  • Quality: 80.75 (automated estimate: 67.1)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 18 amino acids
Sequencing depth
11.7 ×
Source
Other features
  • G+C Content: 49.69%
  • Coding Density: 91.89%
  • Codon Table: 11
  • N50: 22,014 bp
  • Contigs: 162
  • Largest Contig: 82,452 bp
  • Assembly Length: 2,494,665 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2017-09
Location
Lat Lon: 34.99562 N 98.68895 W
Toponym
Geo Loc Name: USA: Anadarko, OK, Zodletone Spring
Environment
Sample Type: metagenomic assembly
Isolation Source: freshwater sediment
Env Broad Scale: Freshwater sediment biome
Env Local Scale: sediment
Env Medium: sediment
Other
Depth: 1m
Package
Ncbi Submission Package: MIMAG.sediment.5.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN17269717 Append as BioSamples
All retrieved samples
Metadata retrieved 4 months ago


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