JSON

Genome sc|0002287

Database

NCBI Assembly

Accession

GCA_014859085.1

Genomics

Accession
NCBI Assembly:GCA_014859085.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.51% (automated estimate: 96.2%)
  • Contamination: 1.1% (automated estimate: 0.9%)
  • Quality: 89.01 (automated estimate: 91.7)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 43.0%)
  • 1 23S rRNA (up to 75.0%)
  • tRNAs for 20 amino acids
Sequencing depth
12.0 ×
Source
Other features
  • G+C Content: 53.74%
  • Coding Density: 90.05%
  • Codon Table: 11
  • N50: 17,136 bp
  • Contigs: 252
  • Largest Contig: 79,300 bp
  • Assembly Length: 2,566,793 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2019-05-18
Location
Lat Lon: 45.4261 N 36.4780 E
Toponym
Geo Loc Name: Ukraine: eastern Crimea
Environment
Sample Type: metagenomic assembly
Isolation Source: bubbling pool in the central crater-like structure of an active mud volcano
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
Additional Accessions
This biosample is a metagenomic assembly obtained from the volcano metagenome sample SAMN15091510 Append as BioSamples
All retrieved samples
Metadata retrieved 4 months ago


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