JSON

Genome sc|0002287

Name

Not registered

Database

NCBI Assembly

Accession

GCA_014859085.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_014859085.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.51% (automated estimate: 96.2%)
  • Contamination: 1.1% (automated estimate: 0.9%)
  • Quality: 89.01 (automated estimate: 91.7)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 43.0%)
  • 1 23S rRNA (up to 75.0%)
  • tRNAs for 20 amino acids
Sequencing depth
12.0 ×
Source
Other features
  • G+C Content: 53.74%
  • Coding Density: 90.05%
  • Codon Table: 11
  • N50: 17,136 bp
  • Contigs: 252
  • Largest Contig: 79,300 bp
  • Assembly Length: 2,566,793 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 7 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2019-05-18
Location
Lat Lon: 45.4261 N 36.4780 E
Toponym
Geo Loc Name: Ukraine: eastern Crimea
Environment
Sample Type: metagenomic assembly
Isolation Source: bubbling pool in the central crater-like structure of an active mud volcano
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
Additional Accessions
This biosample is a metagenomic assembly obtained from the volcano metagenome sample SAMN15091510 Append as BioSamples
All retrieved samples
Metadata retrieved 7 months ago


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