SeqCode Registry
cognitis nomina
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Genomes
sc|0002288
JSON
Genome sc|0002288
Name
“Stagnicultor aquiferi”
Database
NCBI Assembly
Accession
GCA_013177935.1
Genomics
Accession
NCBI Assembly:
GCA_013177935.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
95.51%
Contamination:
0.0%
Quality:
95.51
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 21 amino acids
Sequencing depth
80.0 ×
Source
BioSample: SAMN14896063
Other features
G+C Content:
50.92%
Coding Density:
93.42%
Codon Table:
11
N50:
543,483 bp
Contigs:
5
Largest Contig:
714,781 bp
Assembly Length:
1,956,872 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2016-04-28
Location
Lat Lon:
58.060226 N 82.826753 E
Toponym
Geo Loc Name:
Russia: Chazhemto settlement, Tomsk oblast
Environment
Sample Type:
metagenomic assembly
Isolation Source:
2.8-km deep subsurface aquifer
Other
Depth:
2.8 km
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
Additional Accessions
This biosample is a metagenomic assembly obtained from the subsurface metagenome sample SAMN07792362
All retrieved samples
SAMN14896063
: Metagenome-assembled Genome sample Candidate division WOR-3 bacterium Ch92
Metadata retrieved
4 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN14896063
×
collection_date
2016-04-28
organism
candidate division WOR-3 bacterium
metagenomic
1
derived-from
This biosample is a metagenomic assembly obtained from the subsurface metagenome sample SAMN07792362
sample_type
metagenomic assembly
environmental-sample
1
metagenome-source
subsurface metagenome
isolate
Ch92
NCBI submission package
Microbe.1.0
depth
2.8 km
geo_loc_name
Russia: Chazhemto settlement, Tomsk oblast
lat_lon
58.060226 N 82.826753 E
isolation_source
2.8-km deep subsurface aquifer
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-05-14
ENA-LAST-UPDATE
2020-06-04
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