JSON

Genome sc|0002289

Database

NCBI Assembly

Accession

GCA_002347155.1

Genomics

Accession
NCBI Assembly:GCA_002347155.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.41% (automated estimate: 89.6%)
  • Contamination: 1.1% (automated estimate: 0.9%)
  • Quality: 88.91 (automated estimate: 85.1)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 45.0%)
  • 1 23S rRNA (up to 52.0%)
  • tRNAs for 21 amino acids
Sequencing depth
28.7 ×
Source
Other features
  • G+C Content: 62.61%
  • Coding Density: 86.44%
  • Codon Table: 11
  • N50: 49,028 bp
  • Contigs: 131
  • Largest Contig: 142,038 bp
  • Assembly Length: 3,797,522 bp
  • Ambiguous Assembly Fraction: 0.011%
Automated checks
Complete

Sample Metadata

Date
Collection Date: not applicable
Location
Not detected
Toponym
Geo Loc Name: Canada:Athabasca Oil Sands
Environment
Sample Type: metagenomic assembly
Isolation Source: waste water
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 4 months ago


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