JSON

Genome sc|0002290

Database

NCBI Assembly

Accession

GCA_016867815.1

Genomics

Accession
NCBI Assembly:GCA_016867815.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.51% (automated estimate: 91.5%)
  • Contamination: 4.4% (automated estimate: 3.8%)
  • Quality: 72.51 (automated estimate: 72.5)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
78.3 ×
Source
Other features
  • G+C Content: 62.6%
  • Coding Density: 87.0%
  • Codon Table: 11
  • N50: 29,079 bp
  • Contigs: 215
  • Largest Contig: 133,796 bp
  • Assembly Length: 3,366,184 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2015
Location
Lat Lon: 6.2556 S 29.5108 E
Toponym
Geo Loc Name: Tanzania: Lake Tanganyika, Kigoma
Environment
Sample Type: metagenomic assembly
Isolation Source: freshwater lake
Env Broad Scale: freshwater lake [ENVO:00000021]
Other
Depth: 150
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 4 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license