JSON

Genome sc|0002304

Database

NCBI Assembly

Accession

GCA_004377355.1

Genomics

Accession
NCBI Assembly:GCA_004377355.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.14% (automated estimate: 94.3%)
  • Contamination: 0.0% (automated estimate: 0.9%)
  • Quality: 95.14 (automated estimate: 89.8)
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 52.0%)
  • 1 23S rRNA (up to 68.0%)
  • tRNAs for 20 amino acids
Sequencing depth
14.0 ×
Source
Other features
  • G+C Content: 36.22%
  • Coding Density: 90.68%
  • Codon Table: 11
  • N50: 13,888 bp
  • Contigs: 211
  • Largest Contig: 55,422 bp
  • Assembly Length: 1,809,868 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2011-01-26
Location
Lat Lon: 27.43 N 86.01 W
Toponym
Geo Loc Name: Atlantic Ocean
Environment
Sample Type: metagenomic assembly
Isolation Source: deep sea sediments associated with petroleum seepage
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 4 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license