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cognitis nomina
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Genomes
sc|0002310
JSON
Genome sc|0002310
Name
“Robertmurraya yapensis”
Database
NCBI Assembly
Accession
GCA_040096375.1
Genomics
Accession
NCBI Assembly:
GCA_040096375.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
98.65%
Contamination:
2.13%
Quality:
88.0
Ribosomal and transfer RNA genes
6 16S rRNAs (up to 57.0%)
5 23S rRNAs (up to 38.0%)
tRNAs for 19 amino acids
Sequencing depth
425.0 ×
Source
BioSample: SAMN40466803
Other features
G+C Content:
37.94%
Coding Density:
85.56%
Codon Table:
11
N50:
166,270 bp
Contigs:
84
Largest Contig:
527,028 bp
Assembly Length:
4,741,722 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2018-05-04
Location
Lat Lon:
50.776389 N 6.043611 E
Toponym
Geo Loc Name:
Germany:Aachen
Environment
Env Broad Scale:
urban biome [
ENVO:01000249
]
Env Local Scale:
digestive tract environment [
ENVO:01001033
]
Env Medium:
fecal material [
ENVO:00002003
]
Other
Host:
Homo sapiens
Rel To Oxygen:
aerobe
Package
Ncbi Submission Package:
MIGS.ba.human-gut.6.0
Biosamplemodel:
MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
SAMN40466803
: Robertmurraya yapensis CLA-AA-H227 draft genome
Metadata retrieved
2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN40466803
×
Keywords: GSC:MIxS;MIGS:6.0
strain
CLA-AA-H227
collection_date
2018-05-04
isol_growth_condt
not provided
ref_biomaterial
not provided
rel_to_oxygen
aerobe
organism
Bacillaceae bacterium CLA-AA-H227
host_taxid
9606
env_broad_scale
urban biome [ENVO:01000249]
host_tissue_sampled
feces [UBERON:0001988]
env_local_scale
digestive tract environment [ENVO:01001033]
host_age
Adult
NCBI submission package
MIGS.ba.human-gut.6.0
host
Homo sapiens
num_replicons
not provided
geo_loc_name
Germany:Aachen
env_medium
fecal material [ENVO:00002003]
lat_lon
50.776389 N 6.043611 E
BioSampleModel
MIGS/MIMS/MIMARKS.human-gut
ENA-FIRST-PUBLIC
2024-06-05
ENA-LAST-UPDATE
2024-06-05
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