SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0002311
JSON
Genome sc|0002311
Database
NCBI Assembly
Accession
GCA_964016515
Genomics
Accession
NCBI Assembly:
GCA_964016515
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
97.02%
Contamination:
0.66%
Quality:
93.72
Sequencing depth
5.06 ×
Source
BioSample: ERS14694884
Other features
G+C Content:
38.1%
Automated checks
Failed: Cannot find ncbi:assembly:GCA_964016515
Sample Metadata
Date
Collection Date:
2016-04-29
Location
Geographic Location Latitude:
13.33
Geographic Location Longitude:
-44.91
Toponym
Geographic Location Country And Or Sea:
not applicable
Environment
Broad Scale Environmental Context:
ENVO:00000447
Local Environmental Context:
ENVO:01000007
Environmental Medium:
ENVO:01000130
Other
Depth:
2477
Package
Ena Checklist:
ERC000024
All retrieved samples
ERS14694884
: Iri_Site2_rp
Metadata retrieved
2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
ERS14694884
×
Raw reads
ENA-CHECKLIST
ERC000024
organism
marine metagenome
broad-scale environmental context
ENVO:00000447
collection date
2016-04-29
geographic location (longitude)
-44.91
environmental medium
ENVO:01000130
geographic location (latitude)
13.33
scientific_name
marine metagenome
local environmental context
ENVO:01000007
depth
2477
ENA-FIRST-PUBLIC
2023-04-20
project name
PRJEB60262
sequencing method
Illumina HiSeq 2500
ENA-LAST-UPDATE
2023-04-20
geographic location (country and/or sea)
not applicable
Search
×
Names
Publications
Authors
Subjects