SeqCode Registry
cognitis nomina
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Genomes
sc|0002325
JSON
Genome sc|0002325
Name
“Oleincola secundus”
Database
NCBI Assembly
Accession
GCA_018400375.1
Genomics
Accession
NCBI Assembly:
GCA_018400375.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
84.75%
Contamination:
0.0%
Quality:
84.75
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 14 amino acids
Sequencing depth
100.0 ×
Source
BioSample: SAMN19006018
Other features
G+C Content:
34.84%
Coding Density:
87.43%
Codon Table:
11
N50:
5,398 bp
Contigs:
464
Largest Contig:
26,510 bp
Assembly Length:
2,010,173 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2010-07-21
Location
Lat Lon:
54.25 N 90.13 E
Toponym
Geo Loc Name:
Russia: Republic of Khakassia, Shirinsky District, Lake Shunet
Environment
Sample Type:
metagenomic assembly
Isolation Source:
5.5 m monimolimnion layer of meromictic lake
Env Broad Scale:
meromictic lake
Env Local Scale:
monimolimnion
Env Medium:
saline lake water
Other
Depth:
5.5
Package
Ncbi Submission Package:
MIMAG.water.5.0
Biosamplemodel:
MIMAG.water
Additional Accessions
SAMN18740207
All retrieved samples
SAMN19006018
: MAG of Candidatus Atribacteria bacterium in Shunet
Metadata retrieved
about 2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN19006018
×
Keywords: GSC:MIxS;MIMAG:5.0
collection_date
2010-07-21
organism
Candidatus Atribacteria bacterium
env_broad_scale
meromictic lake
metagenomic
1
environmental-sample
1
env_local_scale
monimolimnion
metagenome-source
salt lake metagenome
isolate
M55B131
NCBI submission package
MIMAG.water.5.0
depth
5.5
derived_from
This BioSample is a metagenomic assembly obtained from the Shunet metagenome BioSample: SAMN18740207.
geo_loc_name
Russia: Republic of Khakassia, Shirinsky District, Lake Shunet
env_medium
saline lake water
lat_lon
54.25 N 90.13 E
isolation_source
5.5 m monimolimnion layer of meromictic lake
sample-type
metagenomic assembly
BioSampleModel
MIMAG.water
ENA-FIRST-PUBLIC
2021-05-04
ENA-LAST-UPDATE
2021-05-04
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