SeqCode Registry
cognitis nomina
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Genomes
sc|0002331
JSON
Genome sc|0002331
Name
“Hadalibacter litoralis”
Database
NCBI Assembly
Accession
GCA_964199975.1
Genomics
Accession
NCBI Assembly:
GCA_964199975.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
87.3%
Contamination:
4.9%
Quality:
62.8
Ribosomal and transfer RNA genes
1 16S rRNA (up to 54.0%)
2 23S rRNAs (up to 90.0%)
tRNAs for 13 amino acids
Sequencing depth
4.0 ×
Source
BioSample: SAMEA14490144
Other features
G+C Content:
59.0%
Coding Density:
91.6%
Codon Table:
11
N50:
4,231 bp
Contigs:
599
Largest Contig:
24,901 bp
Assembly Length:
2,256,330 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2017-12-20
Location
Geographic Location Latitude:
78.11
Geographic Location Longitude:
14.35
Toponym
Geographic Location Country And Or Sea:
Svalbard
Environment
Environment Biome:
marine biome [
ENVO:00000447
]
Environment Feature:
microbial feature [
ENVO:01000007
]
Other
Geographic Location Depth:
-0.02
Package
Ena Checklist:
ERC000021
All retrieved samples
SAMEA14490144
: surface sediment metagenome
Metadata retrieved
about 2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMEA14490144
×
surface sediment metagenome
geographic location (depth)
-0.02
ENA-CHECKLIST
ERC000021
environment (material)
shallow marine sediment [ENVO:03000034]
organism
marine sediment metagenome
collection date
2017-12-20
geographic location (longitude)
14.35
sediment environmental package
sediment
geographic location (latitude)
78.11
scientific_name
marine sediment metagenome
geographic location (elevation)
-8.84
investigation type
metagenome
ENA-FIRST-PUBLIC
2022-06-30
project name
PRJEB53193
sequencing method
Illumina HiSeq 2500
ENA-LAST-UPDATE
2022-06-30
environment (biome)
marine biome [ENVO:00000447]
environment (feature)
microbial feature [ENVO:01000007]
geographic location (country and/or sea)
Svalbard
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