SeqCode Registry
cognitis nomina
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Genomes
sc|0002332
JSON
Genome sc|0002332
Name
“Ilumatobacter isfjordensis”
Database
NCBI Assembly
Accession
GCA_964199985.1
Genomics
Accession
NCBI Assembly:
GCA_964199985.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
92.5%
Contamination:
8.1%
Quality:
52.0
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 19 amino acids
Sequencing depth
6.0 ×
Source
BioSample: SAMEA14490147
Other features
G+C Content:
64.0%
Coding Density:
91.5%
Codon Table:
11
N50:
6,911 bp
Contigs:
876
Largest Contig:
31,251 bp
Assembly Length:
4,821,387 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2018-02-28
Location
Geographic Location Latitude:
78.11
Geographic Location Longitude:
14.35
Toponym
Geographic Location Country And Or Sea:
Svalbard
Environment
Environment Biome:
marine biome [
ENVO:00000447
]
Environment Feature:
microbial feature [
ENVO:01000007
]
Other
Geographic Location Depth:
-0.02
Package
Ena Checklist:
ERC000021
All retrieved samples
SAMEA14490147
: surface sediment metagenome
Metadata retrieved
about 2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMEA14490147
×
surface sediment metagenome
geographic location (depth)
-0.02
ENA-CHECKLIST
ERC000021
environment (material)
shallow marine sediment [ENVO:03000034]
organism
marine sediment metagenome
collection date
2018-02-28
geographic location (longitude)
14.35
sediment environmental package
sediment
geographic location (latitude)
78.11
scientific_name
marine sediment metagenome
geographic location (elevation)
-5.5
investigation type
metagenome
ENA-FIRST-PUBLIC
2022-06-30
project name
PRJEB53193
sequencing method
Illumina HiSeq 2500
ENA-LAST-UPDATE
2022-06-30
environment (biome)
marine biome [ENVO:00000447]
environment (feature)
microbial feature [ENVO:01000007]
geographic location (country and/or sea)
Svalbard
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