Genome sc|0002343


Database

NCBI Assembly

Accession

GCA_040224245.1

Genomics

Accession
NCBI Assembly:GCA_040224245.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.4%
  • Contamination: 1.9%
  • Quality: 83.9
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
24.6 ×
Source
Other features
  • G+C Content: 54.18%
  • Coding Density: 90.07%
  • Codon Table: 11
  • N50: 67,950 bp
  • Contigs: 100
  • Largest Contig: 138,570 bp
  • Assembly Length: 3,890,274 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2022-02-16
Location
Lat Lon: 8.3752 N 78.0637 E
Toponym
Geo Loc Name: India:Manapad Beach
Environment
Isolation Source: flat gracilaria
Other
Host: not available
Package
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved 3 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license