SeqCode Registry
cognitis nomina
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Genomes
sc|0002343
JSON
Genome sc|0002343
Name
“Falsipuniceicoccus dictyotae”
Database
NCBI Assembly
Accession
GCA_040224245.1
Genomics
Accession
NCBI Assembly:
GCA_040224245.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
93.4%
Contamination:
1.9%
Quality:
83.9
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
24.6 ×
Source
SRA: SRR22428450
Other features
G+C Content:
54.18%
Coding Density:
90.07%
Codon Table:
11
N50:
67,950 bp
Contigs:
100
Largest Contig:
138,570 bp
Assembly Length:
3,890,274 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2022-02-16
Location
Lat Lon:
8.3752 N 78.0637 E
Toponym
Geo Loc Name:
India:Manapad Beach
Environment
Isolation Source:
flat gracilaria
Other
Host:
not available
Package
Biosamplemodel:
Metagenome or environmental
All retrieved samples
SRS15881744
: algae metagenome
Metadata retrieved
3 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS15881744
×
Retrieved via SRR22428450
collection_date
2022-02-16
ENA-FIRST-PUBLIC
2022-11-29
organism
algae metagenome
ENA-LAST-UPDATE
2022-11-29
host
not available
BioSampleModel
Metagenome or environmental
geo_loc_name
India:Manapad Beach
lat_lon
8.3752 N 78.0637 E
isolation_source
flat gracilaria
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