The genome was assembled to contigs from Fastq files using Shovill (Seeman, 2017) at the Galaxy web platform public server (https://usegalaxy.org) (Afgan et al. 2016). Further analysis was performed using the Protologger (Hitch, 2021) via online portal (https://protologger.bi.denbi.de/). rRNA genes were identified by alignment of gene sequences from M. avium using the local BLAST installation (Camacho , 2009).
This genome was automatically retrieved and processed using MiGA
(The Microbial Genomes Atlas) [1], and the estimate has not been
overridden by the submitter.