JSON

Genome sc|0002347

Name

Not registered

Database

NCBI Assembly

Accession

ASM4128716v1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:ASM4128716v1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.62%
  • Contamination: 0.38%
  • Quality: 97.72
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 62.0%)
  • 3 23S rRNAs (up to 85.0%)
Sequencing depth
230.0 ×
Source
Other features
  • G+C Content: 66.86%
Submitter comments
The genome was assembled to contigs from Fastq files using Shovill (Seeman, 2017) at the Galaxy web platform public server (https://usegalaxy.org) (Afgan et al. 2016). Further analysis was performed using the Protologger (Hitch, 2021) via online portal (https://protologger.bi.denbi.de/). rRNA genes were identified by alignment of gene sequences from M. avium using the local BLAST installation (Camacho , 2009).
Automated checks
Failed: Cannot find ncbi:assembly:ASM4128716v1
Edit genome data
Last modified 5 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2021-09-24
Location
Not detected
Toponym
Geo Loc Name: USA: Nevada
Environment
Isolation Source: Nasal Swabs
Other
Host: Homo sapiens
Package
Ncbi Package: SARS-CoV-2.cl.1.0
All retrieved samples
Metadata retrieved 5 months ago


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