Genome sc|0002347

Genomics

Accession

NCBI Assembly:ASM4128716v1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.62%
• Contamination: 0.38%
• Quality: 97.72

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 62.0%)
• 3 23S rRNAs (up to 85.0%)

Sequencing depth

230.0 ×

Source

• SRA: SRR30017328

Other features

• G+C Content: 66.86%

Submitter comments

The genome was assembled to contigs from Fastq files using Shovill (Seeman, 2017) at the Galaxy web platform public server (https://usegalaxy.org) (Afgan et al. 2016). Further analysis was performed using the Protologger (Hitch, 2021) via online portal (https://protologger.bi.denbi.de/). rRNA genes were identified by alignment of gene sequences from M. avium using the local BLAST installation (Camacho , 2009).

Automated checks

Failed: Cannot find ncbi:assembly:ASM4128716v1

Sample Metadata

Date

Collection Date: 2021-09-24

Location

Not detected

Toponym

Geo Loc Name: USA: Nevada

Environment

Isolation Source: Nasal Swabs

Other

Host: Homo sapiens

Package

Ncbi Package: SARS-CoV-2.cl.1.0

All retrieved samples

• SRS22151213: CDC Sars CoV2 Sequencing Baseline Constellation

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Metadata retrieved 3 months ago